Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015932444.1_cds_XP_016478970.1_70557
CDS Infomation

[gene=LOC107800324] [db_xref=GeneID:107800324] [protein=pentatricopeptide repeat-containing protein At5g40400-like] [protein_id=XP_016478970.1] [location=116157..118061] [gbkey=CDS]
Sequence

ATGAATCTAACTCAGAAATCAATCAAATACACATGTTCGAGTAGAAATTTATTAATTGAT
TTCAAGAATTTGCAGTCAAGATTGAATTTTACATCATTGTCATCATCAAATTTTCTCCAA
ACTTTAACAGTAAATAATGGGTCCAGACCCATTTCAAACTCCCTTCACAACTTTCTACCT
GAAACCCAAAACCCTCAAAACATTGTTAGTCTGATATGCTCGGCACTAAAGAACAAAAAC
AATGGCCATTTGGTCCTTCTTCAGAAAACCATCGAAAATCATGGGCTTATTGGTTATCTC
CGTAACACTGAAATCTCAAGGGTCCTGTTGAGATGCCAGTCTGATTCATCTACCGCTCTT
AGCTTCTTCAACTGGGTCAAGACTGATTTAGGTGTCAAACCTAACACTCAAAACTACTGT
CTTGTTATTCATATATTGACTTGGTCAAAAAACTTTTCACAAGCAATGAAAATTTTGTCT
GAATTGGTTAATTTGAAGAGAGATGGACCGGTCAGCGTAGATGTGTTTGAGAGTTTGCTT
TCAGCTAGTGGTGTATGCAATTGGGACCCTGTTGTGTTTGATATGCTAATTAAGGCTTTT
CTCAAGGTGAATATGGTGAAAGATGGTTTTAGAGCTTTTAGAAAGACGGTGAAGCATGGT
ATGTACCCGACTGTTATTACCATAAACTGTCTTTTAAATGGTCTTTCAAAGTTAAATTAT
AGTAAAAAATGTTGGGAAGTATATGCTGAAATGGAAAGAATAGGAGTGCACCCAAATTCG
TGTACCTTCAATATATTAACTCTTGTCTTGTGCAAGGATGAAGATGCGAACAAGGTCAAT
GATTTCTTGGAGAAAATGGAAGAAGAAGGGTTTCAACCTGATATAGTTACATATAATACA
TTAGTTAGTAGCTATTGTAGGAAAGAAAGATTGAAAGATGCAGTCTACTTGTATCAAATT
ATGTACATTAGAGGCGTATTACCAGATTTGTTCACATACACTAGTTTGATAAATGGCTTT
TGTAGGAAAGGAAATGTGAGAGATGCTCATCAGTTGTTCCTGAGAATGGCTGACAGAGGG
TTAAAACCAGATCTTATTTTGTATAACACTCTTATTTGTGGTTATTGCAAAGAGGGGATG
ATGCAAGAAGCACGGTTTCTTTTGCATGACATGATTGGAGAAGGGATGTACCCTGATAAG
TTCACTTGTTCGGTTCTTGTACAAGGATATCAAAATCAGGATAACCTAGTTTCCGCTGTG
AATTTAGTCACAGAGCTTCAAAGGTTTAGATTTGTAGTATCTCATGATATATACAACTAT
CTAATTGCTGCTCTTTGTATGGAGACTCGACCATTTGCAGCCAAGGCTCTATTGGATCGA
GTATCTGGCAATGGATATGAGCCTAACAATATGGTCTATAGGGAGTTGATTGAATCTTTC
TGCAGATGGAATTTCCCTGATGAGGCCTTGTGTTTGAAAGCTGAGATGGTGTTAAAAGAT
TTGAAGCCCGATATATGTACATATAGAGCTATAATTAAGAGTTTGTGTAAATTAAGCCGA
AGCATGGAGGCTAATTCCTTGATGAGAGAAATGACTGATTTTGATGTGCCGCCTGATATT
GAAGTTTGTCGAGCTTTAGTAAATGGGCATTGCAGAGAAAACAATTTCTGTGAGGCGCAA
TCGCTGTTAAGCTTCTTTGCTCAAGAATTTGGAATATTTGACACAGTTTGTTACAACGCA
ATTATCAGGCTTCTAATCGCTGAATGTGATATTGCCAAATTGTTGAAATTTCAAGATAAA
ATGAGGAAAGTGGGTTTTGTGCCAAATCAGCTGACATGCAAGTACGTAATTGATGGATTA
CAGAAAGCTGTGAGAGTCCACAAAATCAACACCCCAGTGCAGTAA

Peptide Sequence

PEP ID

XP_016478970.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g40400-like [Nicotiana tabacum]
Sequence

MNLTQKSIKYTCSSRNLLIDFKNLQSRLNFTSLSSSNFLQTLTVNNGSRPISNSLHNFLP
ETQNPQNIVSLICSALKNKNNGHLVLLQKTIENHGLIGYLRNTEISRVLLRCQSDSSTAL
SFFNWVKTDLGVKPNTQNYCLVIHILTWSKNFSQAMKILSELVNLKRDGPVSVDVFESLL
SASGVCNWDPVVFDMLIKAFLKVNMVKDGFRAFRKTVKHGMYPTVITINCLLNGLSKLNY
SKKCWEVYAEMERIGVHPNSCTFNILTLVLCKDEDANKVNDFLEKMEEEGFQPDIVTYNT
LVSSYCRKERLKDAVYLYQIMYIRGVLPDLFTYTSLINGFCRKGNVRDAHQLFLRMADRG
LKPDLILYNTLICGYCKEGMMQEARFLLHDMIGEGMYPDKFTCSVLVQGYQNQDNLVSAV
NLVTELQRFRFVVSHDIYNYLIAALCMETRPFAAKALLDRVSGNGYEPNNMVYRELIESF
CRWNFPDEALCLKAEMVLKDLKPDICTYRAIIKSLCKLSRSMEANSLMREMTDFDVPPDI
EVCRALVNGHCRENNFCEAQSLLSFFAQEFGIFDTVCYNAIIRLLIAECDIAKLLKFQDK
MRKVGFVPNQLTCKYVIDGLQKAVRVHKINTPVQ

Transcript Sequence

Gene sequence data has not been registered.